Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_2065Chorismate mutase. (128 aa)    
Predicted Functional Partners:
CF8_2064
Prephenate dehydrogenase.
  
 
  0.983
CF8_0096
Prephenate dehydratase.
    
 0.918
CF8_1911
Chorismate synthase.
  
 
  0.905
CF8_3616
Anthranilate synthase component.
    
  0.840
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.819
cmk
Cytidylate kinase.
       0.819
CF8_3614
Anthranilate synthase, component II.
    
  0.816
CF8_3613
Anthranilate synthase component.
    
  0.778
CF8_0445
Isochorismate synthase.
  
  
  0.774
CF8_2062
Phospholipid/glycerol acyltransferase.
       0.773
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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