Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2099Hypothetical protein. (153 aa)    
Predicted Functional Partners:
CF8_2098
SPFH domain-containing protein/band 7 family.
 
 
 0.977
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.835
CF8_1328
Precorrin-3 methyltransferase / precorrin-2.
  
    0.828
CF8_2100
ABC transporter-like protein.
       0.795
CF8_2097
Hypothetical protein.
       0.674
CF8_0319
Hypothetical protein.
  
 
 0.558
CF8_2107
Phosphoserine phosphatase.
       0.500
CF8_2101
Hypothetical protein.
       0.482
CF8_2102
4Fe-4S ferredoxin iron-sulfur binding protein.
       0.482
CF8_2103
Transcriptional regulator.
       0.482
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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