Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2117Hypothetical protein. (84 aa)    
Predicted Functional Partners:
CF8_0198
Hypothetical protein.
  
     0.682
CF8_2413
Hypothetical protein.
  
     0.603
CF8_2396
Nucleic acid binding protein with OB-fold.
  
     0.602
CF8_0121
Hypothetical protein.
  
     0.489
CF8_2114
Enoyl-(acyl carrier protein) reductase.
       0.480
CF8_3453
Hypothetical protein.
  
     0.437
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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