Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2134Hypothetical protein. (121 aa)    
Predicted Functional Partners:
CF8_2135
NifU family SUF system FeS assembly protein.
 
  
 0.990
CF8_2137
FeS assembly ATPase SufC.
 
  
 0.951
CF8_2136
SufS subfamily cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.950
CF8_2139
FeS assembly protein SufD.
 
   
 0.925
CF8_2140
FeS assembly protein SufB.
 
   
 0.909
CF8_2133
Hypothetical protein.
       0.773
CF8_1353
phenylacetate-CoA oxygenase subunit PaaB.
  
 
 0.765
CF8_2138
Rieske (2Fe-2S) domain-containing protein.
 
     0.764
CF8_2141
Transcriptional regulator.
     
 0.721
CF8_2131
Hypothetical protein; Overlaps another CDS with the same product name.
       0.678
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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