Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2145ABC-2 type transporter. (263 aa)    
Predicted Functional Partners:
CF8_2144
ABC transporter-like protein.
 
 
  0.966
CF8_2142
ABC-2 type transporter.
    
  0.923
CF8_2146
Cytochrome oxidase assembly.
 
   
 0.915
CF8_2959
ABC transporter-like protein.
  
 
  0.909
CF8_3224
ABC-2 type transporter.
  
  
  0.904
CF8_0323
Substrate-binding region of ABC-type glycine.
     
  0.896
CF8_1607
ABC-3 protein.
    
  0.896
CF8_3383
Phosphate binding protein.
     
  0.891
CF8_0180
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
     
  0.889
CF8_0405
ABC-2 type transporter.
     
  0.889
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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