Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2195Thioredoxin reductase. (552 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
  
 0.999
CF8_3401
ATPase domain-containing protein.
  
 0.985
CF8_2194
ATPase domain-containing protein.
 
 0.983
CF8_1693
ATPase domain-containing protein.
  
 0.941
CF8_2420
Thioredoxin reductase.
 
 
0.923
CF8_1469
Thioredoxin domain-containing protein.
  
 0.907
CF8_2182
Thioredoxin.
  
 0.907
CF8_2422
Thioredoxin; Belongs to the thioredoxin family.
  
 0.907
CF8_3784
Thioredoxin; Belongs to the thioredoxin family.
  
 0.907
CF8_3964
Thioredoxin; Belongs to the thioredoxin family.
  
 0.907
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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