Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_2209acyl-CoA dehydrogenase domain-containing. (388 aa)    
Predicted Functional Partners:
CF8_2208
Short chain dehydrogenase.
 
  0.985
CF8_2212
acyl-CoA dehydrogenase domain-containing; Overlaps another CDS with the same product name.
  
  0.983
CF8_2211
acyl-CoA dehydrogenase domain-containing; Overlaps another CDS with the same product name.
 
  
  0.948
CF8_3055
Dehydratase.
  
  0.896
CF8_0734
acyl-CoA dehydrogenase domain-containing; Overlaps another CDS with the same product name.
 
  
  0.839
CF8_2226
Lipid-transfer protein.
  
  0.835
CF8_2207
Regulatory protein, TetR.
 
     0.813
CF8_2189
acetyl-CoA acetyltransferase.
  
  0.796
CF8_2048
Putative CoA transferase beta subunit.
  
 
  0.792
CF8_2188
Lipid-transfer protein.
  
  0.791
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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