Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2245TetR family transcriptional regulator. (203 aa)    
Predicted Functional Partners:
CF8_2227
Hypothetical protein.
 
     0.798
CF8_2170
Rieske (2Fe-2S) domain-containing protein.
  
  
 0.791
CF8_2187
Hypothetical protein.
  
     0.761
CF8_2188
Lipid-transfer protein.
  
   
 0.756
CF8_2047
Coenzyme A transferase.
  
     0.734
CF8_2048
Putative CoA transferase beta subunit.
  
     0.734
CF8_2243
Methyltransferase type 11.
 
 
   0.718
CF8_2189
acetyl-CoA acetyltransferase.
  
     0.717
CF8_2217
acyl-CoA dehydrogenase type 2.
  
     0.717
CF8_3495
Hypothetical protein.
  
   
 0.676
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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