Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2248Hypothetical protein. (86 aa)    
Predicted Functional Partners:
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
 0.888
CF8_2247
Short-chain dehydrogenase/reductase SDR.
 
  
  0.828
CF8_2246
Short-chain dehydrogenase/reductase SDR.
    
  0.802
CF8_2249
FAD-dependent pyridine nucleotide-disulfide.
       0.773
CF8_0165
Carboxyl transferase.
     
  0.679
CF8_3593
Carboxyl transferase.
     
  0.679
CF8_1438
methylmalonyl-CoA mutase.
     
 0.649
CF8_2250
FtsQ.
       0.648
CF8_2251
Hypothetical protein.
       0.648
CF8_2252
Virulence factor Mce family protein.
       0.648
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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