Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_2297Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. (265 aa)    
Predicted Functional Partners:
CF8_2298
Hypothetical protein.
 
 0.998
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
 
 0.984
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 0.978
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 0.967
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
 
  
 0.960
CF8_0565
Short-chain dehydrogenase/reductase SDR.
  
 0.944
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
 0.938
pyrB
Aspartate carbamoyltransferase catalytic; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.935
CF8_3918
phenylalanyl-tRNA synthetase subunit alpha; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.923
CF8_3919
phenylalanyl-tRNA synthetase beta subunit.
  
  
 0.923
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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