STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrDDihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (343 aa)    
Predicted Functional Partners:
CF8_2298
Hypothetical protein.
  
 0.996
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
 0.990
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 0.988
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
 
  
 0.975
CF8_0565
Short-chain dehydrogenase/reductase SDR.
  
 0.972
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
 
 0.972
CF8_3918
phenylalanyl-tRNA synthetase subunit alpha; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.949
CF8_3919
phenylalanyl-tRNA synthetase beta subunit.
  
  
 0.949
pyrB
Aspartate carbamoyltransferase catalytic; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.919
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 0.906
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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