Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2349Type II secretion system protein E. (490 aa)    
Predicted Functional Partners:
CF8_2350
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.973
CF8_2351
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.966
CF8_2347
SAF domain-containing protein.
 
    0.937
CF8_2348
Hypothetical protein.
 
     0.937
CF8_2741
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
 0.900
CF8_2740
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.888
CF8_1713
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.876
CF8_0919
Type II secretion system protein.
 
 
  0.870
CF8_1714
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.853
CF8_2354
TadE family protein.
 
    0.850
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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