Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2365Hypothetical protein. (282 aa)    
Predicted Functional Partners:
CF8_2366
ParB-like protein.
 
     0.959
CF8_2367
Hypothetical protein.
 
     0.933
CF8_2368
Peptidase M23B.
 
     0.905
CF8_2363
Prophage Lp4 protein 7.
 
     0.828
CF8_2370
Hypothetical protein.
 
     0.828
CF8_2377
Serine/arginine repetitive matrix protein.
 
     0.828
CF8_2371
Integral membrane.
 
     0.789
CF8_2372
Hypothetical protein.
 
     0.780
CF8_2375
Hypothetical protein.
 
     0.779
CF8_2373
Hypothetical protein.
 
     0.775
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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