Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_2379Type IV secretory pathway VirD4 components-like protein. (571 aa)    
Predicted Functional Partners:
CF8_2378
Hypothetical protein.
 
     0.949
CF8_2376
ATP-binding protein.
 
  
 0.948
CF8_2377
Serine/arginine repetitive matrix protein.
 
    0.948
CF8_2375
Hypothetical protein.
 
     0.888
CF8_2372
Hypothetical protein.
 
   
 0.788
CF8_2386
Hypothetical protein.
 
     0.786
CF8_2385
Single-strand binding protein/primosomal.
 
     0.783
CF8_2371
Integral membrane.
 
     0.779
CF8_2373
Hypothetical protein.
 
     0.775
CF8_2343
DNA primase catalytic core.
 
     0.774
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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