Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2385Single-strand binding protein/primosomal. (139 aa)    
Predicted Functional Partners:
CF8_2386
Hypothetical protein.
 
     0.953
CF8_4051
DNA primase catalytic core.
 
 
 0.896
CF8_0195
DNA polymerase III, subunits gamma and tau.
    
 0.865
CF8_0270
DNA polymerase III, delta prime subunit.
    
 0.865
CF8_2655
DNA polymerase III subunit alpha.
    
 0.864
CF8_2688
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
    
 0.864
CF8_1250
UvrD/REP helicase.
  
 0.861
CF8_3976
DNA primase catalytic core.
 
 
 0.849
CF8_1749
DNA primase catalytic core.
 
 
 0.844
CF8_2378
Hypothetical protein.
 
     0.828
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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