Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2407DNA-binding protein. (119 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.628
CF8_2408
Short chain dehydrogenase.
       0.626
CF8_2409
Hypothetical protein.
       0.625
CF8_2451
Endonuclease/exonuclease/phosphatase.
    
 0.534
CF8_2406
DNA-binding protein.
       0.515
CF8_3110
Glycerophosphoryl diester phosphodiesterase.
     
  0.431
CF8_3111
Glycerophosphoryl diester phosphodiesterase.
     
  0.431
CF8_2405
Hypothetical protein.
       0.427
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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