Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_2453Competence/damage-inducible protein cinA; Belongs to the CinA family. (172 aa)    
Predicted Functional Partners:
CF8_2451
Endonuclease/exonuclease/phosphatase.
  
 
  0.822
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.811
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
 
 0.737
CF8_2454
Helix-turn-helix domain-containing protein.
    
 0.727
CF8_2450
5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.
  
 
  0.699
CF8_0384
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
     
 0.675
CF8_1247
NUDIX hydrolase.
     
 0.645
CF8_3167
MazG nucleotide pyrophosphohydrolase.
     
  0.590
CF8_2452
Glycoside hydrolase 15.
       0.574
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
    
 0.468
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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