Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2583ABC transporter-like protein. (1146 aa)    
Predicted Functional Partners:
CF8_0757
Alcohol dehydrogenase.
    
  0.663
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
  0.660
dnaK-2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
  0.660
CF8_0804
ABC transporter.
  
  
  0.659
CF8_2584
NAD-dependent epimerase/dehydratase.
       0.658
CF8_2959
ABC transporter-like protein.
    
  0.652
CF8_1607
ABC-3 protein.
     
  0.650
rpsB
SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
    
  0.646
CF8_0808
Extracellular solute-binding protein.
  
  
  0.637
CF8_3228
Extracellular solute-binding protein.
  
  
  0.635
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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