Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_2596L-glutamine synthetase. (476 aa)    
Predicted Functional Partners:
CF8_2503
Glutamate synthase (NADH) large subunit.
  
 
 0.975
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 0.936
CF8_2504
Glutamate synthase subunit beta.
  
 
 0.935
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
 
 
 0.927
CF8_0891
Glutamate dehydrogenase (NAD).
     
 0.896
glmS
Glucosamine--fructose-6-phosphate; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.881
CF8_2865
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.877
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.849
CF8_3880
Gamma-glutamyltransferase.
     
 0.849
CF8_3279
Nitrite reductase (NAD(P)H), small subunit.
     
 0.846
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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