Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_2597Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (203 aa)    
Predicted Functional Partners:
CF8_0284
Short chain dehydrogenase.
  
 
  0.864
CF8_3496
Short chain dehydrogenase.
  
 
  0.863
CF8_2247
Short-chain dehydrogenase/reductase SDR.
  
 
  0.857
CF8_2045
Short chain dehydrogenase.
  
 
  0.852
CF8_4005
Short-chain dehydrogenase/reductase SDR.
  
 
  0.838
CF8_2115
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
  0.837
CF8_2202
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.828
CF8_1828
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.819
CF8_3998
Short chain dehydrogenase.
  
 
  0.819
CF8_1540
Short-chain dehydrogenase/reductase SDR.
  
 
  0.767
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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