Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_2685Hypothetical protein. (148 aa)    
Predicted Functional Partners:
CF8_2766
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.669
dinB-2
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.665
CF8_2687
Methyltransferase type 11.
       0.589
CF8_2688
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
       0.552
CF8_2762
Cytochrome c, class I.
  
     0.531
CF8_2699
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
     0.496
CF8_1071
DsbA oxidoreductase.
  
     0.492
CF8_2763
Rieske (2Fe-2S) domain-containing protein.
  
     0.473
CF8_2547
Hypothetical protein.
  
     0.450
CF8_2764
Cytochrome b/b6 domain-containing protein.
  
     0.434
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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