Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2690Hypothetical protein. (102 aa)    
Predicted Functional Partners:
CF8_2688
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
 
     0.812
CF8_2325
Hypothetical protein.
  
     0.747
CF8_0924
Peptidoglycan-binding LysM.
  
     0.479
CF8_2691
Hypothetical protein.
       0.471
CF8_2360
Peptidoglycan-binding LysM.
  
     0.458
CF8_2692
YbaK/prolyl-tRNA synthetase associated region.
 
     0.451
CF8_3906
Hypothetical protein.
  
     0.446
CF8_1711
Hypothetical protein.
  
     0.436
CF8_2694
Membrane protein.
 
     0.435
CF8_2348
Hypothetical protein.
  
     0.430
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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