Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2735Cyclase/dehydrase. (145 aa)    
Predicted Functional Partners:
CF8_3140
Hypothetical protein.
  
 
 
 0.906
CF8_2734
Arsenite-transporting ATPase.
 
    0.821
CF8_2733
Hypothetical protein.
       0.775
CF8_3333
Helix-turn-helix domain-containing protein.
  
     0.752
CF8_2732
Glucokinase.
       0.749
CF8_0415
Phospholipid/glycerol acyltransferase.
  
     0.743
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
 
    0.691
CF8_0414
NAD-dependent epimerase/dehydratase.
  
     0.673
CF8_3298
Hypothetical protein.
  
     0.658
CF8_0210
Anion-transporting ATPase; Overlaps another CDS with the same product name.
 
    0.607
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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