Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2736AMP-dependent synthetase and ligase. (597 aa)    
Predicted Functional Partners:
CF8_4192
Hypothetical protein.
    
  0.794
CF8_2524
AMP-dependent synthetase and ligase.
  
  
  0.722
CF8_1140
propionyl-CoA carboxylase.
     
  0.649
CF8_3009
Carboxyl transferase.
     
  0.649
CF8_3020
Carbamoyl-phosphate synthase L chain.
     
  0.649
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
  0.608
CF8_0066
SNF2-related protein.
    
  0.599
CF8_1358
Helicase domain-containing protein.
    
  0.599
CF8_2625
Putative helicase.
    
  0.599
CF8_0394
Ankyrin repeat protein.
   
  0.583
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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