Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_2741Type II secretion system protein; Overlaps another CDS with the same product name. (310 aa)    
Predicted Functional Partners:
CF8_2738
Flp pilus assembly protein ATPase CpaE-like.
 
 
 0.992
CF8_2740
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
 0.991
CF8_2739
Type II secretion system protein E.
 
 
 0.986
CF8_2737
SAF domain-containing protein.
 
 
 0.977
CF8_0252
Type II secretion system protein E.
 
 
 0.912
CF8_0898
Type II secretion system protein E.
 
 
 0.912
CF8_1844
Type II secretion system protein E.
 
 
 0.911
CF8_0917
Type II secretion system protein E.
 
 
 0.909
CF8_1712
Type II secretion system protein E.
 
 
 0.907
CF8_0961
Type II secretion system protein.
 
 
 0.902
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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