Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2843DNA protecting protein DprA. (378 aa)    
Predicted Functional Partners:
CF8_2844
Mg chelatase, subunit ChlI.
 
 0.939
CF8_2845
Hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.874
CF8_1550
DNA internalization-related competence protein.
 
  
 0.825
CF8_1194
Hypothetical protein.
 
 
 0.684
xerC
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
     0.680
CF8_1910
Peptidase A24A, prepilin type IV.
  
  
 0.657
CF8_3398
Hypothetical protein.
  
  
 0.600
CF8_2848
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.593
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.592
CF8_2846
Hypothetical protein.
       0.530
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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