rnc protein (Nocardioides sp. CF8) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (264 aa)

Predicted Functional Partners:

CF8_3231

0.920

rplS

0.903

CF8_1223

0.890

rplQ

0.888

rpmF

0.887

rpsO

0.887

rpsB

0.884

rplO

0.882

rplC

0.877

CF8_1228

0.877

Your Current Organism:

Nocardioides sp. CF8

NCBI taxonomy Id: 110319
Other names: N. sp. CF8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF8_1223	rnc	CF8_1223	CF8_2879	Phosphotransferase domain-containing protein.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.890
CF8_1228	CF8_3231	CF8_1228	CF8_3231	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpA.	0.902
CF8_1228	rnc	CF8_1228	CF8_2879	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.877
CF8_1228	rplC	CF8_1228	CF8_0676	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.811
CF8_1228	rplO	CF8_1228	CF8_0695	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.711
CF8_1228	rplQ	CF8_1228	CF8_0715	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	50S ribosomal protein L17P.	0.708
CF8_1228	rplS	CF8_1228	CF8_2849	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.468
CF8_1228	rpmF	CF8_1228	CF8_1320	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.496
CF8_1228	rpsB	CF8_1228	CF8_2840	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.842
CF8_1228	rpsO	CF8_1228	CF8_2791	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.886
CF8_3231	CF8_1228	CF8_3231	CF8_1228	ATP-dependent helicase HrpA.	DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.	0.902
CF8_3231	rnc	CF8_3231	CF8_2879	ATP-dependent helicase HrpA.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.920
CF8_3231	rplC	CF8_3231	CF8_0676	ATP-dependent helicase HrpA.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.789
CF8_3231	rplO	CF8_3231	CF8_0695	ATP-dependent helicase HrpA.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.712
CF8_3231	rplQ	CF8_3231	CF8_0715	ATP-dependent helicase HrpA.	50S ribosomal protein L17P.	0.613
CF8_3231	rplS	CF8_3231	CF8_2849	ATP-dependent helicase HrpA.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.702
CF8_3231	rpmF	CF8_3231	CF8_1320	ATP-dependent helicase HrpA.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.613
CF8_3231	rpsB	CF8_3231	CF8_2840	ATP-dependent helicase HrpA.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.938
CF8_3231	rpsO	CF8_3231	CF8_2791	ATP-dependent helicase HrpA.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.941
rnc	CF8_1223	CF8_2879	CF8_1223	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Phosphotransferase domain-containing protein.	0.890

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