Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2887AsnC family transcriptional regulator. (78 aa)    
Predicted Functional Partners:
CF8_2888
Hypothetical protein.
       0.713
CF8_1923
uroporphyrinogen-III C-methyltransferase.
  
 
  0.688
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.648
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
  0.603
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
  
     0.515
rpmB-2
50S ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.434
CF8_3616
Anthranilate synthase component.
   
 
  0.430
CF8_2735
Cyclase/dehydrase.
  
     0.423
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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