Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2895Hypothetical protein. (211 aa)    
Predicted Functional Partners:
CF8_2977
LPPG:FO 2-phospho-L-lactate transferase.
 
  
 0.979
CF8_1292
FO synthase.
 
  
 0.847
CF8_2978
F420-dependent oxidoreductase, putative.
 
   
 0.801
CF8_0150
Hypothetical protein.
  
   
 0.697
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.654
CF8_2894
Phospholipid/glycerol acyltransferase.
       0.654
CF8_0098
Hypothetical protein.
  
     0.606
CF8_3298
Hypothetical protein.
  
     0.547
CF8_2160
Hypothetical protein.
    
 0.525
CF8_0211
Anion-transporting ATPase; Overlaps another CDS with the same product name.
  
     0.517
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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