Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_2932Cytidine/deoxycytidylate. (223 aa)    
Predicted Functional Partners:
CF8_0122
Hypothetical protein.
  
     0.747
CF8_3328
dTDP-4-keto-L-rhamnose reductase and; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
  0.736
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.688
CF8_2797
Alcohol dehydrogenase.
  
 
 0.687
CF8_3771
Methicillin resistance protein.
 
     0.637
CF8_2720
Flavin reductase domain-containing protein.
  
     0.634
CF8_0149
Amino acid-binding ACT domain-containing.
  
     0.631
CF8_0391
Hypothetical protein.
  
     0.628
CF8_1451
Hypothetical protein.
  
     0.613
CF8_2888
Hypothetical protein.
  
     0.598
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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