Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2974Hypothetical protein. (452 aa)    
Predicted Functional Partners:
CF8_2975
Glycosyl transferase family protein.
 
     0.953
CF8_1193
Hypothetical protein.
  
     0.695
CF8_2413
Hypothetical protein.
  
     0.672
CF8_0122
Hypothetical protein.
  
     0.668
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.647
CF8_1098
Rod shape-determining protein.
  
     0.597
CF8_3906
Hypothetical protein.
  
     0.574
CF8_2989
Cell envelope-related transcriptional.
 
     0.573
CF8_1452
Hypothetical protein.
  
     0.571
CF8_1188
Hypothetical protein.
  
     0.567
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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