Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2991Cell envelope-related transcriptional. (392 aa)    
Predicted Functional Partners:
CF8_2989
Cell envelope-related transcriptional.
 
  
 0.866
CF8_3842
Cell envelope-related transcriptional.
 
  
0.809
CF8_2992
enoyl-CoA hydratase.
       0.778
CF8_1410
Cell envelope-related transcriptional.
  
  
 
0.762
CF8_1004
Chromosome replication initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
    0.756
CF8_4099
Hypothetical protein.
   
    0.756
CF8_3808
Helix-turn-helix, HxlR type.
   
    0.748
CF8_2552
Regulatory protein, MarR.
   
    0.739
CF8_2141
Transcriptional regulator.
  
    0.738
CF8_2990
Thioesterase superfamily protein.
       0.663
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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