STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3071Fumarate reductase iron-sulfur subunit. (259 aa)    
Predicted Functional Partners:
CF8_3072
Succinate dehydrogenase flavoprotein subunit.
 
 0.999
CF8_3075
Succinate dehydrogenase flavoprotein subunit.
  
 0.999
CF8_3073
Integral membrane protein.
 
 
 
 0.993
CF8_0793
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.987
CF8_1408
Alpha-ketoglutarate decarboxylase.
  
 0.987
CF8_3076
Succinate dehydrogenase/fumarate reductase.
    
 
0.986
sucD
succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
 0.977
CF8_0124
Hypothetical protein.
  
 0.970
CF8_2054
Hypothetical protein.
  
 0.970
CF8_2218
3-ketosteroid-delta-1-dehydrogenase.
  
 0.970
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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