Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3103Integral membrane protein. (119 aa)    
Predicted Functional Partners:
CF8_3104
Hypothetical protein.
       0.773
CF8_3105
Amino acid permease-associated region.
       0.773
CF8_3102
ATP-dependent DNA helicase PcrA.
       0.748
CF8_3107
ATPase domain-containing protein.
 
     0.718
CF8_3106
Regulatory protein, LuxR.
       0.591
CF8_3108
PspC domain-containing protein.
 
     0.532
CF8_0113
CD9/CD37/CD63 antigen.
  
     0.518
CF8_3812
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
 
     0.453
CF8_0315
Hypothetical protein.
  
     0.423
CF8_2506
Hypothetical protein.
  
     0.415
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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