Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3148Hypothetical protein. (238 aa)    
Predicted Functional Partners:
CF8_3149
Hypothetical protein.
       0.701
CF8_3150
Ribonuclease BN.
       0.701
CF8_2937
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
  0.648
CF8_0582
Threonine dehydratase.
     
  0.630
CF8_3151
Hypothetical protein.
       0.601
CF8_3152
Hypothetical protein.
       0.599
CF8_3153
Cystathionine beta-synthase.
       0.599
CF8_2611
Beta-lactamase domain-containing protein.
     
  0.429
CF8_3966
Beta-lactamase.
     
  0.429
CF8_3154
GDSL family lipase.
       0.428
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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