Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3175ATPase domain-containing protein. (482 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
 
 0.986
CF8_3176
Regulatory protein.
   
   0.838
CF8_1408
Alpha-ketoglutarate decarboxylase.
    
 0.826
CF8_3026
Protein phosphatase 2C domain-containing.
  
 
 0.783
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
  0.762
CF8_3599
Transketolase, central region.
    
  0.762
CF8_1191
Response regulator receiver.
  
 0.736
CF8_0897
Response regulator receiver.
  
 0.733
CF8_4121
Two component transcriptional regulator.
  
 0.720
CF8_3611
Response regulator receiver.
  
 0.702
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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