Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3191Hypothetical protein. (190 aa)    
Predicted Functional Partners:
CF8_3189
C-methyltransferase.
 
     0.577
CF8_3180
GlcNAc-PI de-N-acetylase.
 
     0.547
CF8_1974
Endonuclease/exonuclease/phosphatase.
  
     0.530
CF8_1477
Inositol-phosphate phosphatase.
  
     0.529
CF8_3178
Hypothetical protein.
 
     0.502
CF8_3179
UDP-galactose 4-epimerase.
 
     0.502
CF8_3188
Glucose-1-phosphate cytidylyltransferase.
 
     0.493
CF8_3183
O-antigen polymerase.
  
     0.479
CF8_3091
Major facilitator transporter.
  
     0.427
CF8_1467
Hypothetical protein.
  
     0.425
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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