Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3200Hypothetical protein. (422 aa)    
Predicted Functional Partners:
CF8_3199
Lipase, class 2.
       0.574
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
       0.556
CF8_2103
Transcriptional regulator.
  
     0.555
CF8_1871
TetR family transcriptional regulator.
  
     0.530
CF8_3521
CdaR family transcriptional regulator.
  
     0.439
CF8_1870
Hypothetical protein.
  
     0.415
CF8_4179
Methyltransferase type 11.
  
     0.414
CF8_1660
Hypothetical protein.
  
     0.411
CF8_2101
Hypothetical protein.
  
     0.406
CF8_0501
Hypothetical protein.
  
     0.405
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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