Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3201phenylacetate-CoA oxygenase/reductase, PaaK. (667 aa)    
Predicted Functional Partners:
CF8_1353
phenylacetate-CoA oxygenase subunit PaaB.
 
 
 0.965
CF8_3663
2,4-dienoyl-CoA reductase.
  
 
 0.949
CF8_1352
phenylacetate-CoA oxygenase subunit PaaA.
 
 0.948
CF8_1351
Aldehyde dehydrogenase.
 
 
 0.947
CF8_1354
phenylacetate-CoA oxygenase, PaaI subunit.
 
 0.945
CF8_0565
Short-chain dehydrogenase/reductase SDR.
  
 
 0.936
CF8_1355
phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.931
CF8_0366
4Fe-4S ferredoxin iron-sulfur binding protein.
   
 0.926
CF8_1795
4Fe-4S ferredoxin iron-sulfur binding protein.
   
 0.926
CF8_2102
4Fe-4S ferredoxin iron-sulfur binding protein.
   
 0.926
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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