Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3203Cation transporter. (455 aa)    
Predicted Functional Partners:
CF8_3202
TrkA-N domain-containing protein.
 
 
 0.982
CF8_3258
TrkA-N domain-containing.
 
 
 0.934
CF8_2394
TrkA domain-containing protein; Overlaps another CDS with the same product name.
  
 
 0.725
CF8_2393
TrkA domain-containing protein; Overlaps another CDS with the same product name.
  
 
 0.710
CF8_2487
TrkA domain-containing protein.
  
 
 0.710
CF8_2282
Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
     
 0.508
CF8_3205
ATP-dependent DNA ligase.
       0.440
CF8_3206
Hypothetical protein.
       0.440
CF8_3207
Glycosyl transferase, group 1.
       0.415
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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