Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_3282Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (227 aa)    
Predicted Functional Partners:
CF8_3281
S-adenosylmethionine:tRNA; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
 
     0.956
CF8_2503
Glutamate synthase (NADH) large subunit.
    
  0.753
CF8_2246
Short-chain dehydrogenase/reductase SDR.
  
 
  0.687
CF8_3998
Short chain dehydrogenase.
  
 
  0.675
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
  
 
 0.669
CF8_1540
Short-chain dehydrogenase/reductase SDR.
  
 
  0.660
CF8_4005
Short-chain dehydrogenase/reductase SDR.
  
 
  0.648
CF8_0984
Short-chain dehydrogenase/reductase SDR.
  
 
  0.647
CF8_3283
Regulatory protein, MerR.
 
     0.642
CF8_1828
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.636
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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