STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3282Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (227 aa)    
Predicted Functional Partners:
CF8_3281
S-adenosylmethionine:tRNA; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
 
     0.956
CF8_2503
Glutamate synthase (NADH) large subunit.
    
  0.743
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
  
 
 0.658
CF8_3283
Regulatory protein, MerR.
 
     0.647
CF8_3278
Bifunctional uroporphyrinogen-III.
       0.563
CF8_3279
Nitrite reductase (NAD(P)H), small subunit.
       0.563
CF8_3280
Assimilatory nitrite reductase (NAD(P)H) large; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
       0.563
CF8_3234
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.520
CF8_0892
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.516
CF8_2797
Alcohol dehydrogenase.
  
 
 0.478
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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