Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3293Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. (218 aa)    
Predicted Functional Partners:
CF8_3381
Phosphate ABC transporter, inner membrane.
 
  
 0.989
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
  
 0.984
CF8_3383
Phosphate binding protein.
 
  
 0.921
CF8_3382
Phosphate ABC transporter, inner membrane; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.910
CF8_3294
ATPase domain-containing protein.
 
   
 0.862
CF8_3295
Response regulator receiver.
 
  
 0.660
CF8_2503
Glutamate synthase (NADH) large subunit.
     
 0.523
CF8_0637
Hypothetical protein.
   
    0.506
CF8_3377
Hypothetical protein.
    
 0.460
CF8_3679
Transcriptional regulator, TetR family.
   
    0.460
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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