Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_3302Aspartate racemase. (230 aa)    
Predicted Functional Partners:
CF8_0582
Threonine dehydratase.
    
  0.807
CF8_2503
Glutamate synthase (NADH) large subunit.
     
  0.806
purK
Phosphoribosylaminoimidazole carboxylase ATPase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
  
 
  0.803
CF8_3182
Asparagine synthase.
 
  
 0.803
CF8_3153
Cystathionine beta-synthase.
     
  0.796
CF8_2107
Phosphoserine phosphatase.
    
  0.779
pyrB
Aspartate carbamoyltransferase catalytic; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.765
CF8_0383
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.747
CF8_1637
L-glutamine synthetase.
     
  0.747
CF8_2596
L-glutamine synthetase.
     
  0.747
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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