STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3306LytTr DNA-binding region. (463 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
    
 0.979
CF8_3401
ATPase domain-containing protein.
    
 0.718
CF8_1165
GAF domain-containing protein.
     
 0.651
CF8_1693
ATPase domain-containing protein.
     
 0.573
CF8_3305
GTP-binding protein TypA.
       0.510
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
  
  0.503
CF8_3307
MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.503
CF8_2195
Thioredoxin reductase.
    
 0.493
CF8_1669
Hypothetical protein.
     
 0.461
CF8_1665
Transcriptional regulator.
  
     0.423
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.