Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3365Capsular exopolysaccharide family. (352 aa)    
Predicted Functional Partners:
CF8_3177
Sugar transferase.
 
 
 0.996
CF8_3323
Sugar transferase.
 
 
 0.996
CF8_3349
Sugar transferase.
 
 
 0.900
CF8_3364
Hypothetical protein.
  
  
 0.896
CF8_3353
Polysaccharide biosynthesis protein CapD.
 
 
 0.819
CF8_3352
Polysaccharide biosynthesis protein CapD.
 
 
 0.811
CF8_1203
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.785
CF8_0014
Protein kinase.
    
 
 0.747
CF8_2703
Protein kinase.
    
 
 0.747
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 0.746
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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