Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3371Glycine cleavage T protein; Belongs to the GcvT family. (314 aa)    
Predicted Functional Partners:
CF8_2773
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 0.919
CF8_3664
HesB/YadR/YfhF-family protein.
  
 0.895
CF8_3373
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
 
    0.873
CF8_3372
FUR family nickel uptake regulator; Belongs to the Fur family.
       0.828
mshD
GCN5-related N-acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
       0.823
CF8_4037
Nitrogen-fixing NifU domain-containing protein.
   
 
 0.731
CF8_2135
NifU family SUF system FeS assembly protein.
     
 0.706
CF8_1137
Hypothetical protein.
  
     0.681
CF8_2146
Cytochrome oxidase assembly.
    
  0.675
CF8_1127
Aminotransferase, class V.
   
 
 0.660
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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