Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_34082Fe-2S iron-sulfur cluster binding protein. (164 aa)    
Predicted Functional Partners:
CF8_3409
Isoquinoline 1-oxidoreductase.
 0.996
CF8_0353
Xanthine dehydrogenase, molybdenum binding.
 0.961
CF8_0348
Xanthine dehydrogenase, molybdenum binding.
 
 0.960
CF8_4235
Xanthine dehydrogenase, molybdenum binding.
 
 0.946
CF8_0346
Molybdopterin dehydrogenase, FAD-binding.
 
 0.923
CF8_0358
Molybdopterin dehydrogenase, FAD-binding.
 
 0.922
CF8_0633
Xanthine dehydrogenase, molybdenum binding.
 
 0.918
CF8_0634
Carbon monoxide dehydrogenase, medium subunit.
 
 0.905
CF8_4233
Carbon-monoxide dehydrogenase (acceptor).
 
 0.904
CF8_0364
Hypothetical protein.
 
  
 0.705
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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