Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3437Helix-turn-helix, type 11 domain-containing. (330 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
     
 0.827
CF8_0317
GCN5-related N-acetyltransferase.
  
     0.564
CF8_3500
Regulatory protein, LuxR.
 
 
 0.525
CF8_3511
Hypothetical protein.
  
 
  0.513
CF8_3486
Griselysin.
  
    0.481
CF8_3679
Transcriptional regulator, TetR family.
  
     0.473
CF8_0136
LuxR family transcriptional regulator.
  
 
 
0.461
CF8_0614
Membrane protein.
  
     0.458
CF8_1546
Hypothetical protein.
  
     0.450
CF8_0222
Beta-lactamase domain-containing protein.
  
 
   0.449
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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