Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3476Hypothetical protein. (447 aa)    
Predicted Functional Partners:
CF8_3475
PE-PGRS family protein.
 
     0.946
CF8_1815
Hypothetical protein; Overlaps another CDS with the same product name.
 
     0.775
CF8_3241
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
  
     0.722
CF8_2329
Ribonuclease.
  
     0.715
CF8_2408
Short chain dehydrogenase.
  
     0.691
CF8_3143
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
  
     0.636
CF8_0892
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.569
CF8_3474
Regulatory protein, TetR.
       0.547
CF8_1928
acyl-CoA dehydrogenase domain-containing; Overlaps another CDS with the same product name.
  
     0.543
CF8_3477
Hydrolase.
       0.522
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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