Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3511Hypothetical protein. (335 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
  
 0.958
CF8_2834
Phosphoglycerate mutase.
  
     0.692
CF8_3509
Histidine kinase, dimerization and.
  
   0.670
CF8_1165
GAF domain-containing protein.
  
 0.645
CF8_2788
Hypothetical protein.
  
     0.561
CF8_3510
Two component LuxR family transcriptional.
       0.554
CF8_3401
ATPase domain-containing protein.
   
 0.537
CF8_3437
Helix-turn-helix, type 11 domain-containing.
  
 
  0.513
CF8_3670
Glycosyl transferase family protein; Overlaps another CDS with the same product name.
  
     0.507
CF8_3037
Alcohol dehydrogenase.
  
     0.497
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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